Fig. 1
From: A genome-wide association study of adults with community-acquired pneumonia
Flowchart of the study design. CADD: Combined Annotation Dependent Depletion, CAP: Community-acquired Pneumonia, GWAS: Genome-wide association study, HLA: Human Leukocyte Antigen, HRC: Haplotype Reference Consortium, HWE: Hardy-Weinberg equilibrium, MAF: Minor Allele Frequency, MSC: Mutation Significance Cutoff, QC: Quality Controls, V2G: Variant to Gene, VEP: Variant Effect Predictor. UK Biobank phenotype codes: bacterial pneumonia (480.1), pneumococcal pneumonia (480.11), Pseudomonas pneumonia (480.12), Viral pneumonia (480.2), and (480.3) pneumonia due to fungus (mycoses)